The surface ruptures of the 2016 Kumamoto Earthquake with a 7.2 magnitude appeared along the northern part of the Futagawa–Hinagu fault zone. The ruptures located at three sites in Mashiki Town in 2018 were designated as a precious natural treasure by the Agency of Cultural Affairs, Japan. Herein, we describe the topography of the displacement along the surface ruptures at the designated areas and examine the relationship between the active fault distribution by tectonic geomorphological interpretation and the surface ruptures that appeared in 2016. At Shioi Shrine and Dozon, surface ruptures with a displacement of approximately 2 m appeared near the location of the active fault line, which was previously known as a fault scarp, displacing the Aso-2 pyroclastic flow and the Takayubaru lava flow. From the viewpoint of tectonic geomorphological interpretation, we could not estimate the surface rupture location at the Fukuhara site, even after the earthquake. The right lateral displacement of the Takayubaru lava flow, which erupted from the Omine pyroclastic cone of the Aso lateral cone in approximately 90 ka, is up to 470-510 m along the Futagawa fault. The mean slip rate during 90 ka is approximately 5.2-5.7 mm/year. This value is much faster than that of this fault in previous studies and shows one of the fastest faults on Japanese islands. Moreover, the slip rate was faster than that calculated based on the displacement along the surface rupture in 2016 and the recurrence interval of the paleo-earthquake during 15 ka. The change in the slip rate of the active fault over a few 10,000 years was not known in the Japanese islands. This suggests that the temperature or stress along the fault plane just after the eruption is different from that in recent geological time. In this case, the timing of the sediment deposition with the slip rate estimation would be critical in evaluating the seismic hazards of the active fault distributed near the volcano.