During surgery for esophageal cancer, injury to the membranous trachea is a lethal complication. A 77-year-old male patient was diagnosed to have esophageal cancer T4 (AI), N1, M0 Stage IVa. Therapy with 5-Fu and CDDP was administered. After 2 cycles of chemotherapy, a fistula developed in the mediastinum and the lung. Therefore, we decided to perform a subtotal esophagectomy and lymphadenectomy of the 3rd region. In addition, we performed a peeling operation with a vessel-sealing system fusion device (Thunder Beat) and lymphadenectomy. Pathological classification was AD, SCC and staging was T3, N2, and M0 Stage III. On the 7th post-operative day, air leakage was noted around the thoracic drain and computed tomography (CT) showed large amount of left pleural effusion. The membranous portion of the trachea fistula was found by bronchoscopy. Therefore, we immediately performed a reoperation. During the reoperation, a 3-cm sized ischemic change was found, and at the centre of the ischemic region, a 1-cm sized fistula was observed. We subsequently created a pedicled muscle flap using the 4th intercostal muscle. After the operation, we carefully manipulated the cuff of the tracheal tube to prevent attachment to the repaired region. On the 68th postoperative day, we were able to remove the tracheal intubation tube and the thoracic cavity drain. On bronchoscopy, the fistula resign was uneven; however, normal epithelial cells covered the surface. At the 114th post-operative day, the patient was discharged from the hospital with complete recovery. However, 2 years after the initial surgery, the patient died due to bronchial pneumonia.